| Name | Home Runs | Career |
| Chris Westervelt | 30 | 98-00 |
| Scott Crossett | 17 | 94-97 |
| Jason Gist | 16 | 93-96 |
| Michael Castleberry | 15 | 96-98 |
| Bronson Martin | 15 | 95-98 |
| Chad LaRose | 14 | 93-96 |
| Brad Fletcher | 13 | 02-04 |
| Brian Krug | 12 | 91-93 |
| Grant Gatlin | 12 | 02-04 |
| Kip Platt | 12 | 90-92 |
| Lance Lamberth | 11 | 95-98 |
| Jeremy Burba | 11 | 02-04 |
| Taylor Fuqua | 9 | 01-03 |
| James Strecker | 9 | 91-93 |
| Sam Cooke | 9 | 00-02 |
| Jason Angel | 9 | |
| Sam Seeger | 8 | 91-93 |
| Matt Wentz | 8 | 95-97 |
| John-Scott Williams | 8 | 98-00 |